Choosing a workflow
Which workflow fits your needs?
RAFT workflows are designed for different analysis goals, so the best choice depends on the biological question you are trying to answer.
For example, LENS is designed for tumor antigen discovery from short-read data, while Gene-Fusions is designed for fusion detection.
Review the workflow table below to compare available workflows and their current status.
Which workflow profile fits your needs?
Each workflow provides a standard profile by default. This profile is
intended to provide a balanced starting point for typical analyses.
Some workflows also offer additional profiles. For example, an exhaustive
profile may run a broader set of tools, while a fast profile may prioritize
turnaround time over breadth.
Review the workflow details below to see which profiles are currently available for each workflow.
Customizing the workflow configuration
RAFT allows users to fully customize the workflow to their liking. Specifically, users can modify:
Which tools are run
Which version of tools are run
Parameters passed to tools
References used throughout the workflow
Users can introduce these modifications through the web-based user interface when running RAFT.
The RAFT workflow configuration interface.