Feature availability
====================

This page summarizes which RAFT user-facing features are currently available
and where they live. It is intended to prevent stale docs from implying that a
planned or external feature is already part of the installed CLI.

.. list-table:: RAFT feature availability
   :widths: 25 20 20 35
   :header-rows: 1

   * - Feature
     - Entry point
     - Status
     - Notes
   * - Project setup
     - ``raft setup``
     - Implemented
     - Creates the RAFT workspace config and standard directories.
   * - Off-the-shelf workflow launch
     - ``raft run`` / ``raft run-ots``
     - Implemented
     - ``raft run`` creates a missing project when workflow/version arguments
       are supplied; otherwise it runs an existing project.
   * - Manifest generator
     - Web UI
     - Implemented
     - Opens during workflow setup when no manifest is supplied; also available
       as a hosted browser tool.
   * - Manifest template
     - ``raft manifest-template``
     - Implemented
     - CLI fallback that writes a tab-delimited starter manifest.
   * - Manifest validation
     - ``raft check-manifest``
     - Implemented
     - Reports required-column, delimiter, sample-prefix, grouping, and optional
       allele issues.
   * - Project status
     - ``raft project-status``
     - Implemented
     - Read-only project summary. Workflow-specific checks can be configured
       with ``*.status.json`` files.
   * - Report viewer
     - ``raft generate-reports``
     - Implemented
     - Creates or serves portable report bundles for workflow outputs.
   * - Workflow config generator
     - Web UI
     - Implemented
     - Used to choose workflow parameters before creating a project.
   * - Module discovery
     - ``raft available-modules``, ``raft available-tools``,
       ``raft available-subworkflows``
     - Implemented
     - Lists configured module repositories and subgroups.
   * - Workflow discovery
     - ``raft available-workflows``
     - Implemented
     - Can inspect workflow details; expensive alternate-tool scans are opt-in.
   * - Manual workflow assembly
     - ``raft load-module``, ``raft list-steps``, ``raft add-step``
     - Implemented
     - Advanced/developer workflow. ``list-steps`` supports TSV and JSON output.
   * - Project packaging
     - ``raft package-project`` / ``raft load-project``
     - Implemented
     - Creates and loads portable project archives.
   * - Control panel
     - none in this repository
     - Not implemented here
     - Older references likely describe functionality from another branch or
       repository. Current docs should not instruct users to run
       the ``control-panel`` command.

Status terms
------------

``Implemented``
  Present in the current CLI or browser UI documented in this repository.

``Not implemented here``
  Not available from this repository's installed CLI. It may be planned,
  experimental, or present in another repository, but users should not expect it
  to work from this codebase.